Detailed information of SNP:
|
SNP ID:
sf1115025885(Gbrowse)
Chromosome: chr11 Position: 15025885 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 65.18% | 34.82% |
| All Indica | 796 | 43.47% | 56.53% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 62.69% | 37.31% |
| Indica I | 375 | 23.47% | 76.53% |
| Indica II | 212 | 60.85% | 39.15% |
| Indica Intermediate | 209 | 61.72% | 38.28% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1115025885 | G->A | INTERGENIC | None |