Detailed information of SNP:
|
SNP ID:
sf1115035656(Gbrowse)
Chromosome: chr11 Position: 15035656 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 75.16% | 24.84% |
| All Indica | 793 | 63.30% | 36.70% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 38.81% | 61.19% |
| Indica I | 375 | 80.27% | 19.73% |
| Indica II | 213 | 44.60% | 55.40% |
| Indica Intermediate | 205 | 51.71% | 48.29% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1115035656 | C->T | INTERGENIC | None |