Detailed information of SNP:
|
SNP ID:
sf1115040093(Gbrowse)
Chromosome: chr11 Position: 15040093 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 81.54% | 18.46% |
| All Indica | 799 | 74.84% | 25.16% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 37.31% | 62.69% |
| Indica I | 375 | 91.47% | 8.53% |
| Indica II | 213 | 50.23% | 49.77% |
| Indica Intermediate | 211 | 70.14% | 29.86% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1115040093 | C->A | INTERGENIC | None |