Detailed information of SNP:
|
SNP ID:
sf1115048330(Gbrowse)
Chromosome: chr11 Position: 15048330 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 71.94% | 28.06% |
| All Indica | 796 | 58.79% | 41.21% |
| All Japonica | 497 | 97.79% | 2.21% |
| Aus | 67 | 37.31% | 62.69% |
| Indica I | 375 | 77.87% | 22.13% |
| Indica II | 212 | 39.15% | 60.85% |
| Indica Intermediate | 209 | 44.50% | 55.50% |
| Temperate Japonica | 335 | 96.72% | 3.28% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1115048330 | G->A | INTERGENIC | None |