Detailed information of SNP:
|
SNP ID:
sf1115056988(Gbrowse)
Chromosome: chr11 Position: 15056988 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 90.97% | 9.03% |
| All Indica | 799 | 87.98% | 12.02% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 65.15% | 34.85% |
| Indica I | 375 | 76.80% | 23.20% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1115056988 | C->T | INTERGENIC | None |