Detailed information of SNP:
|
SNP ID:
sf1115096819(Gbrowse)
Chromosome: chr11 Position: 15096819 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1391 | 65.49% | 34.51% |
| All Indica | 799 | 98.75% | 1.25% |
| All Japonica | 469 | 4.90% | 95.10% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 311 | 6.11% | 93.89% |
| Tropical Japonica | 92 | 2.17% | 97.83% |
| Japonica Intermediate | 66 | 3.03% | 96.97% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1115096819 | T->C | INTERGENIC | None |