Detailed information of SNP:
|
SNP ID:
sf1115118901(Gbrowse)
Chromosome: chr11 Position: 15118901 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1363 | 96.18% | 3.82% |
| All Indica | 797 | 99.75% | 0.25% |
| All Japonica | 445 | 89.21% | 10.79% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 209 | 99.52% | 0.48% |
| Temperate Japonica | 303 | 99.67% | 0.33% |
| Tropical Japonica | 86 | 52.33% | 47.67% |
| Japonica Intermediate | 56 | 89.29% | 10.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1115118901 | A->G | LOC_Os11g27060(LOC_Os11g27060.1) | Synonymous |