Detailed information of SNP:
|
SNP ID:
sf1115126505(Gbrowse)
Chromosome: chr11 Position: 15126505 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 58.25% | 41.75% |
| All Indica | 798 | 93.61% | 6.39% |
| All Japonica | 497 | 1.81% | 98.19% |
| Aus | 67 | 62.69% | 37.31% |
| Indica I | 374 | 95.99% | 4.01% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 87.20% | 12.80% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1115126505 | G->A | LOC_Os11g27090(LOC_Os11g27090.1) | Synonymous |