Detailed information of SNP:
|
SNP ID:
sf1115180261(Gbrowse)
Chromosome: chr11 Position: 15180261 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 64.78% | 35.22% |
| All Indica | 796 | 98.99% | 1.01% |
| All Japonica | 495 | 6.06% | 93.94% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 98.93% | 1.07% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 7.46% | 92.54% |
| Tropical Japonica | 93 | 3.23% | 96.77% |
| Japonica Intermediate | 67 | 2.99% | 97.01% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1115180261 | G->C | LOC_Os11g27170(LOC_Os11g27170.1) | INTRON |