Detailed information of SNP:
|
SNP ID:
sf1115225140(Gbrowse)
Chromosome: chr11 Position: 15225140 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 92.17% | 7.83% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 495 | 78.38% | 21.62% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 71.26% | 28.74% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1115225140 | A->C | LOC_Os11g27264(LOC_Os11g27264.2) | INTRON |
| sf1115225140 | A->C | LOC_Os11g27264(LOC_Os11g27264.1) | INTRON |