Detailed information of SNP:
|
SNP ID:
sf1115233412(Gbrowse)
Chromosome: chr11 Position: 15233412 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 97.31% | 2.69% |
| All Indica | 791 | 97.72% | 2.28% |
| All Japonica | 497 | 96.18% | 3.82% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 98.66% | 1.34% |
| Indica II | 211 | 97.16% | 2.84% |
| Indica Intermediate | 208 | 96.63% | 3.37% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1115233412 | G->A | LOC_Os11g27290(LOC_Os11g27290.1) | Synonymous |