Detailed information of SNP:
|
SNP ID:
sf1115255456(Gbrowse)
Chromosome: chr11 Position: 15255456 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1291 | 93.65% | 6.35% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 373 | 78.28% | 21.72% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 242 | 66.94% | 33.06% |
| Tropical Japonica | 79 | 100.00% | 0.00% |
| Japonica Intermediate | 52 | 98.08% | 1.92% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 97.37% | 2.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1115255456 | G->A | LOC_Os11g27329(LOC_Os11g27329.4) | INTRON |
| sf1115255456 | G->A | LOC_Os11g27329(LOC_Os11g27329.5) | INTRON |
| sf1115255456 | G->A | LOC_Os11g27329(LOC_Os11g27329.1) | INTRON |