Detailed information of SNP:
|
SNP ID:
sf1115259194(Gbrowse)
Chromosome: chr11 Position: 15259194 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1402 | 97.65% | 2.35% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 480 | 93.54% | 6.46% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 325 | 100.00% | 0.00% |
| Tropical Japonica | 91 | 69.23% | 30.77% |
| Japonica Intermediate | 64 | 95.31% | 4.69% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1115259194 | C->T | LOC_Os11g27329(LOC_Os11g27329.4) | INTRON |
| sf1115259194 | C->T | LOC_Os11g27329(LOC_Os11g27329.5) | INTRON |
| sf1115259194 | C->T | LOC_Os11g27329(LOC_Os11g27329.1) | INTRON |