Detailed information of SNP:
|
SNP ID:
sf1115260135(Gbrowse)
Chromosome: chr11 Position: 15260135 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1294 | 94.20% | 5.80% |
| All Indica | 685 | 90.07% | 9.93% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 59 | 93.22% | 6.78% |
| Indica I | 332 | 92.47% | 7.53% |
| Indica II | 170 | 86.47% | 13.53% |
| Indica Intermediate | 183 | 89.07% | 10.93% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1115260135 | A->G | LOC_Os11g27329(LOC_Os11g27329.4) | INTRON |
| sf1115260135 | A->G | LOC_Os11g27329(LOC_Os11g27329.5) | INTRON |
| sf1115260135 | A->G | LOC_Os11g27329(LOC_Os11g27329.1) | INTRON |