Detailed information of SNP:
|
SNP ID:
sf1115301234(Gbrowse)
Chromosome: chr11 Position: 15301234 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1386 | 96.61% | 3.39% |
| All Indica | 798 | 100.00% | 0.00% |
| All Japonica | 465 | 91.61% | 8.39% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 330 | 99.39% | 0.61% |
| Tropical Japonica | 75 | 56.00% | 44.00% |
| Japonica Intermediate | 60 | 93.33% | 6.67% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1115301234 | G->A | LOC_Os11g27400(LOC_Os11g27400.1) | Non-Synonymous SNP |