Detailed information of SNP:
|
SNP ID:
sf1115310627(Gbrowse)
Chromosome: chr11 Position: 15310627 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1231 | 92.61% | 7.39% |
| All Indica | 635 | 88.66% | 11.34% |
| All Japonica | 495 | 99.19% | 0.81% |
| Aus | 51 | 74.51% | 25.49% |
| Indica I | 282 | 89.72% | 10.28% |
| Indica II | 186 | 90.86% | 9.14% |
| Indica Intermediate | 167 | 84.43% | 15.57% |
| Temperate Japonica | 333 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 36 | 97.22% | 2.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1115310627 | C->T | LOC_Os11g27410(LOC_Os11g27410.1) | Synonymous |