Detailed information of SNP:
|
SNP ID:
sf1115337687(Gbrowse)
Chromosome: chr11 Position: 15337687 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1376 | 91.57% | 8.43% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 457 | 77.90% | 22.10% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 300 | 97.67% | 2.33% |
| Tropical Japonica | 91 | 16.48% | 83.52% |
| Japonica Intermediate | 66 | 72.73% | 27.27% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 39 | 94.87% | 5.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1115337687 | T->G | LOC_Os11g27450(LOC_Os11g27450.1) | Non-Synonymous SNP |