Detailed information of SNP:
|
SNP ID:
sf1115354182(Gbrowse)
Chromosome: chr11 Position: 15354182 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1352 | 62.72% | 37.28% |
| All Indica | 790 | 54.81% | 45.19% |
| All Japonica | 442 | 75.79% | 24.21% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 373 | 46.11% | 53.89% |
| Indica II | 209 | 60.29% | 39.71% |
| Indica Intermediate | 208 | 64.90% | 35.10% |
| Temperate Japonica | 299 | 92.31% | 7.69% |
| Tropical Japonica | 80 | 20.00% | 80.00% |
| Japonica Intermediate | 63 | 68.25% | 31.75% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 39 | 64.10% | 35.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1115354182 | A->G | INTERGENIC | None |