Detailed information of SNP:
|
SNP ID:
sf1115359864(Gbrowse)
Chromosome: chr11 Position: 15359864 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1391 | 89.65% | 10.35% |
| All Indica | 771 | 81.84% | 18.16% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 92.23% | 7.77% |
| Indica II | 197 | 65.48% | 34.52% |
| Indica Intermediate | 201 | 78.61% | 21.39% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1115359864 | C->T | LOC_Os11g27500(LOC_Os11g27500.1) | Non-Synonymous SNP |