Detailed information of SNP:
|
SNP ID:
sf1115370291(Gbrowse)
Chromosome: chr11 Position: 15370291 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1366 | 97.66% | 2.34% |
| All Indica | 757 | 96.70% | 3.30% |
| All Japonica | 494 | 99.80% | 0.20% |
| Aus | 62 | 91.94% | 8.06% |
| Indica I | 345 | 95.94% | 4.06% |
| Indica II | 209 | 98.56% | 1.44% |
| Indica Intermediate | 203 | 96.06% | 3.94% |
| Temperate Japonica | 332 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1115370291 | C->T | LOC_Os11g27520(LOC_Os11g27520.1) | INTRON |