Detailed information of SNP:
|
SNP ID:
sf1115383841(Gbrowse)
Chromosome: chr11 Position: 15383841 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1396 | 96.13% | 3.87% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 474 | 89.66% | 10.34% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 321 | 92.83% | 7.17% |
| Tropical Japonica | 92 | 91.30% | 8.70% |
| Japonica Intermediate | 61 | 70.49% | 29.51% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1115383841 | C->T | INTERGENIC | None |