Detailed information of SNP:
|
SNP ID:
sf1115397090(Gbrowse)
Chromosome: chr11 Position: 15397090 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1364 | 97.95% | 2.05% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 442 | 93.89% | 6.11% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 287 | 95.47% | 4.53% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 62 | 80.65% | 19.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1115397090 | T->A | INTERGENIC | None |