Detailed information of SNP:
|
SNP ID:
sf1115415618(Gbrowse)
Chromosome: chr11 Position: 15415618 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1325 | 95.47% | 4.53% |
| All Indica | 717 | 92.89% | 7.11% |
| All Japonica | 491 | 100.00% | 0.00% |
| Aus | 61 | 88.52% | 11.48% |
| Indica I | 355 | 97.46% | 2.54% |
| Indica II | 173 | 89.02% | 10.98% |
| Indica Intermediate | 189 | 87.83% | 12.17% |
| Temperate Japonica | 329 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1115415618 | C->T | LOC_Os11g27570(LOC_Os11g27570.1) | Synonymous |