Detailed information of SNP:
|
SNP ID:
sf1115452534(Gbrowse)
Chromosome: chr11 Position: 15452534 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1401 | 58.74% | 41.26% |
| All Indica | 794 | 65.49% | 34.51% |
| All Japonica | 486 | 40.12% | 59.88% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 82.89% | 17.11% |
| Indica II | 211 | 43.13% | 56.87% |
| Indica Intermediate | 209 | 56.94% | 43.06% |
| Temperate Japonica | 328 | 32.01% | 67.99% |
| Tropical Japonica | 91 | 74.73% | 25.27% |
| Japonica Intermediate | 67 | 32.84% | 67.16% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 40 | 75.00% | 25.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1115452534 | A->G | INTERGENIC | None |