Detailed information of SNP:
|
SNP ID:
sf1115460720(Gbrowse)
Chromosome: chr11 Position: 15460720 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1392 | 96.84% | 3.16% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 471 | 91.51% | 8.49% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 321 | 99.69% | 0.31% |
| Tropical Japonica | 86 | 55.81% | 44.19% |
| Japonica Intermediate | 64 | 98.44% | 1.56% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1115460720 | A->T | INTERGENIC | None |