Detailed information of SNP:
|
SNP ID:
sf1115464410(Gbrowse)
Chromosome: chr11 Position: 15464410 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1406 | 94.59% | 5.41% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 485 | 87.22% | 12.78% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 328 | 99.39% | 0.61% |
| Tropical Japonica | 92 | 41.30% | 58.70% |
| Japonica Intermediate | 65 | 90.77% | 9.23% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1115464410 | C->G | INTERGENIC | None |