Detailed information of SNP:
|
SNP ID:
sf1115506870(Gbrowse)
Chromosome: chr11 Position: 15506870 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1360 | 53.31% | 46.69% |
| All Indica | 747 | 84.47% | 15.53% |
| All Japonica | 496 | 2.42% | 97.58% |
| Aus | 63 | 88.89% | 11.11% |
| Indica I | 344 | 85.17% | 14.83% |
| Indica II | 202 | 89.11% | 10.89% |
| Indica Intermediate | 201 | 78.61% | 21.39% |
| Temperate Japonica | 334 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 40 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1115506870 | A->G | INTERGENIC | None |