Detailed information of SNP:
|
SNP ID:
sf1115509836(Gbrowse)
Chromosome: chr11 Position: 15509836 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1399 | 92.49% | 7.51% |
| All Indica | 785 | 88.15% | 11.85% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 62 | 85.48% | 14.52% |
| Indica I | 370 | 88.92% | 11.08% |
| Indica II | 207 | 90.34% | 9.66% |
| Indica Intermediate | 208 | 84.62% | 15.38% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1115509836 | T->C | INTERGENIC | None |