Detailed information of SNP:
|
SNP ID:
sf1115516488(Gbrowse)
Chromosome: chr11 Position: 15516488 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1335 | 78.58% | 21.42% |
| All Indica | 720 | 65.28% | 34.72% |
| All Japonica | 496 | 99.40% | 0.60% |
| Aus | 63 | 60.32% | 39.68% |
| Indica I | 326 | 71.47% | 28.53% |
| Indica II | 199 | 55.28% | 44.72% |
| Indica Intermediate | 195 | 65.13% | 34.87% |
| Temperate Japonica | 334 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1115516488 | C->T | LOC_Os11g27760(LOC_Os11g27760.1) | Synonymous |