Detailed information of SNP:
|
SNP ID:
sf1115517098(Gbrowse)
Chromosome: chr11 Position: 15517098 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 95.02% | 4.98% |
| All Indica | 790 | 93.67% | 6.33% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 64 | 73.44% | 26.56% |
| Indica I | 374 | 97.33% | 2.67% |
| Indica II | 206 | 87.86% | 12.14% |
| Indica Intermediate | 210 | 92.86% | 7.14% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1115517098 | G->A | LOC_Os11g27760(LOC_Os11g27760.1) | Non-Synonymous SNP |