Detailed information of SNP:
|
SNP ID:
sf1115517296(Gbrowse)
Chromosome: chr11 Position: 15517296 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1373 | 83.90% | 16.10% |
| All Indica | 758 | 75.46% | 24.54% |
| All Japonica | 496 | 97.98% | 2.02% |
| Aus | 63 | 68.25% | 31.75% |
| Indica I | 357 | 84.87% | 15.13% |
| Indica II | 201 | 71.14% | 28.86% |
| Indica Intermediate | 200 | 63.00% | 37.00% |
| Temperate Japonica | 334 | 97.90% | 2.10% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1115517296 | T->A | LOC_Os11g27760(LOC_Os11g27760.1) | Non-Synonymous SNP |