Detailed information of SNP:
|
SNP ID:
sf1115522135(Gbrowse)
Chromosome: chr11 Position: 15522135 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1391 | 83.82% | 16.18% |
| All Indica | 773 | 74.00% | 26.00% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 359 | 76.04% | 23.96% |
| Indica II | 207 | 69.08% | 30.92% |
| Indica Intermediate | 207 | 75.36% | 24.64% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1115522135 | A->G | LOC_Os11g27770(LOC_Os11g27770.1) | Synonymous |