Detailed information of SNP:
|
SNP ID:
sf1115543619(Gbrowse)
Chromosome: chr11 Position: 15543619 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1398 | 65.38% | 34.62% |
| All Indica | 799 | 99.37% | 0.63% |
| All Japonica | 477 | 4.40% | 95.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 321 | 4.67% | 95.33% |
| Tropical Japonica | 92 | 5.43% | 94.57% |
| Japonica Intermediate | 64 | 1.56% | 98.44% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1115543619 | T->A | INTERGENIC | None |