Detailed information of SNP:
|
SNP ID:
sf1115589012(Gbrowse)
Chromosome: chr11 Position: 15589012 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1298 | 53.93% | 46.07% |
| All Indica | 697 | 86.94% | 13.06% |
| All Japonica | 494 | 2.63% | 97.37% |
| Aus | 56 | 96.43% | 3.57% |
| Indica I | 333 | 87.99% | 12.01% |
| Indica II | 180 | 86.67% | 13.33% |
| Indica Intermediate | 184 | 85.33% | 14.67% |
| Temperate Japonica | 332 | 2.41% | 97.59% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 13 | 7.69% | 92.31% |
| Intermediate | 38 | 68.42% | 31.58% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1115589012 | T->C | LOC_Os11g27890(LOC_Os11g27890.1) | INTRON |