Detailed information of SNP:
|
SNP ID:
sf1115597549(Gbrowse)
Chromosome: chr11 Position: 15597549 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1362 | 95.89% | 4.11% |
| All Indica | 798 | 100.00% | 0.00% |
| All Japonica | 442 | 87.78% | 12.22% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 307 | 99.67% | 0.33% |
| Tropical Japonica | 71 | 35.21% | 64.79% |
| Japonica Intermediate | 64 | 89.06% | 10.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1115597549 | C->T | LOC_Os11g27910(LOC_Os11g27910.1) | INTRON |