Detailed information of SNP:
|
SNP ID:
sf1115603049(Gbrowse)
Chromosome: chr11 Position: 15603049 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1383 | 95.59% | 4.41% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 462 | 87.66% | 12.34% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 314 | 99.36% | 0.64% |
| Tropical Japonica | 82 | 39.02% | 60.98% |
| Japonica Intermediate | 66 | 92.42% | 7.58% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1115603049 | A->C | INTERGENIC | None |