Detailed information of SNP:
|
SNP ID:
sf1115742464(Gbrowse)
Chromosome: chr11 Position: 15742464 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 71.80% | 28.20% |
| All Indica | 795 | 54.09% | 45.91% |
| All Japonica | 497 | 98.19% | 1.81% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 373 | 48.53% | 51.47% |
| Indica II | 213 | 58.22% | 41.78% |
| Indica Intermediate | 209 | 59.81% | 40.19% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1115742464 | G->A | LOC_Os11g28184(LOC_Os11g28184.3) | UTR_5_PRIME |
| sf1115742464 | G->A | LOC_Os11g28184(LOC_Os11g28184.2) | UTR_5_PRIME |
| sf1115742464 | G->A | LOC_Os11g28184(LOC_Os11g28184.1) | UTR_5_PRIME |