Detailed information of SNP:
|
SNP ID:
sf1115752686(Gbrowse)
Chromosome: chr11 Position: 15752686 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1387 | 93.87% | 6.13% |
| All Indica | 768 | 89.19% | 10.81% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 369 | 99.73% | 0.27% |
| Indica II | 194 | 68.04% | 31.96% |
| Indica Intermediate | 205 | 90.24% | 9.76% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1115752686 | C->T | LOC_Os11g28210(LOC_Os11g28210.1) | SNPs that introduce stop codons |