Detailed information of SNP:
|
SNP ID:
sf1115767976(Gbrowse)
Chromosome: chr11 Position: 15767976 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1348 | 90.06% | 9.94% |
| All Indica | 740 | 87.57% | 12.43% |
| All Japonica | 495 | 98.99% | 1.01% |
| Aus | 61 | 54.10% | 45.90% |
| Indica I | 336 | 83.93% | 16.07% |
| Indica II | 207 | 95.65% | 4.35% |
| Indica Intermediate | 197 | 85.28% | 14.72% |
| Temperate Japonica | 333 | 98.50% | 1.50% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 76.32% | 23.68% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1115767976 | G->A | LOC_Os11g28230(LOC_Os11g28230.1) | Non-Synonymous SNP |