Detailed information of SNP:
|
SNP ID:
sf1115772521(Gbrowse)
Chromosome: chr11 Position: 15772521 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1404 | 62.89% | 37.11% |
| All Indica | 784 | 38.52% | 61.48% |
| All Japonica | 497 | 98.19% | 1.81% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 371 | 46.63% | 53.37% |
| Indica II | 205 | 19.02% | 80.98% |
| Indica Intermediate | 208 | 43.27% | 56.73% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1115772521 | G->A | LOC_Os11g28240(LOC_Os11g28240.1) | Non-Synonymous SNP |