Detailed information of SNP:
|
SNP ID:
sf1115774811(Gbrowse)
Chromosome: chr11 Position: 15774811 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1380 | 63.26% | 36.74% |
| All Indica | 776 | 97.16% | 2.84% |
| All Japonica | 483 | 4.55% | 95.45% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 363 | 97.80% | 2.20% |
| Indica II | 211 | 98.58% | 1.42% |
| Indica Intermediate | 202 | 94.55% | 5.45% |
| Temperate Japonica | 328 | 4.27% | 95.73% |
| Tropical Japonica | 89 | 6.74% | 93.26% |
| Japonica Intermediate | 66 | 3.03% | 96.97% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1115774811 | T->C | LOC_Os11g28250(LOC_Os11g28250.1) | Synonymous |