Detailed information of SNP:
|
SNP ID:
sf1115774927(Gbrowse)
Chromosome: chr11 Position: 15774927 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1402 | 77.25% | 22.75% |
| All Indica | 782 | 60.49% | 39.51% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 367 | 52.32% | 47.68% |
| Indica II | 211 | 63.98% | 36.02% |
| Indica Intermediate | 204 | 71.57% | 28.43% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1115774927 | G->T | LOC_Os11g28250(LOC_Os11g28250.1) | Synonymous |