Detailed information of SNP:
|
SNP ID:
sf1115820841(Gbrowse)
Chromosome: chr11 Position: 15820841 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 63.42% | 36.58% |
| All Indica | 799 | 97.62% | 2.38% |
| All Japonica | 495 | 3.43% | 96.57% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 334 | 2.99% | 97.01% |
| Tropical Japonica | 93 | 6.45% | 93.55% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1115820841 | T->C | INTERGENIC | None |