Detailed information of SNP:
|
SNP ID:
sf1115833496(Gbrowse)
Chromosome: chr11 Position: 15833496 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 85.33% | 14.67% |
| All Indica | 799 | 81.10% | 18.90% |
| All Japonica | 497 | 97.59% | 2.41% |
| Aus | 66 | 53.03% | 46.97% |
| Indica I | 375 | 71.20% | 28.80% |
| Indica II | 213 | 87.32% | 12.68% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1115833496 | G->A | INTERGENIC | None |