Detailed information of SNP:
|
SNP ID:
sf1115877188(Gbrowse)
Chromosome: chr11 Position: 15877188 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 68.84% | 31.16% |
| All Indica | 794 | 87.28% | 12.72% |
| All Japonica | 497 | 36.42% | 63.58% |
| Aus | 65 | 98.46% | 1.54% |
| Indica I | 373 | 84.18% | 15.82% |
| Indica II | 211 | 89.10% | 10.90% |
| Indica Intermediate | 210 | 90.95% | 9.05% |
| Temperate Japonica | 335 | 17.91% | 82.09% |
| Tropical Japonica | 94 | 76.60% | 23.40% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1115877188 | C->T | LOC_Os11g28390(LOC_Os11g28390.1) | INTRON |