Detailed information of SNP:
|
SNP ID:
sf1115877914(Gbrowse)
Chromosome: chr11 Position: 15877914 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1158 | 54.66% | 45.34% |
| All Indica | 624 | 75.48% | 24.52% |
| All Japonica | 435 | 24.60% | 75.40% |
| Aus | 55 | 61.82% | 38.18% |
| Indica I | 293 | 70.31% | 29.69% |
| Indica II | 173 | 80.92% | 19.08% |
| Indica Intermediate | 158 | 79.11% | 20.89% |
| Temperate Japonica | 313 | 11.50% | 88.50% |
| Tropical Japonica | 71 | 64.79% | 35.21% |
| Japonica Intermediate | 51 | 49.02% | 50.98% |
| Group VI/Aromatic | 13 | 0.00% | 100.00% |
| Intermediate | 31 | 67.74% | 32.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1115877914 | T->A | INTERGENIC | None |