Detailed information of SNP:
|
SNP ID:
sf1115885171(Gbrowse)
Chromosome: chr11 Position: 15885171 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1338 | 62.03% | 37.97% |
| All Indica | 742 | 86.52% | 13.48% |
| All Japonica | 481 | 23.28% | 76.72% |
| Aus | 62 | 77.42% | 22.58% |
| Indica I | 345 | 88.99% | 11.01% |
| Indica II | 197 | 85.28% | 14.72% |
| Indica Intermediate | 200 | 83.50% | 16.50% |
| Temperate Japonica | 325 | 11.69% | 88.31% |
| Tropical Japonica | 91 | 53.85% | 46.15% |
| Japonica Intermediate | 65 | 38.46% | 61.54% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 39 | 69.23% | 30.77% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1115885171 | T->C | LOC_Os11g28410(LOC_Os11g28410.1) | Non-Synonymous SNP |