Detailed information of SNP:
|
SNP ID:
sf1115911779(Gbrowse)
Chromosome: chr11 Position: 15911779 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 90.95% | 9.05% |
| All Indica | 795 | 87.30% | 12.70% |
| All Japonica | 497 | 95.98% | 4.02% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 372 | 86.56% | 13.44% |
| Indica II | 213 | 87.79% | 12.21% |
| Indica Intermediate | 210 | 88.10% | 11.90% |
| Temperate Japonica | 335 | 97.01% | 2.99% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1115911779 | C->T | INTERGENIC | None |