Detailed information of SNP:
|
SNP ID:
sf1115928284(Gbrowse)
Chromosome: chr11 Position: 15928284 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 69.67% | 30.33% |
| All Indica | 796 | 95.85% | 4.15% |
| All Japonica | 492 | 23.37% | 76.63% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 98.13% | 1.87% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 209 | 90.43% | 9.57% |
| Temperate Japonica | 330 | 26.67% | 73.33% |
| Tropical Japonica | 94 | 25.53% | 74.47% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1115928284 | T->C | LOC_Os11g28480(LOC_Os11g28480.1) | INTRON |