Detailed information of SNP:
|
SNP ID:
sf1115932346(Gbrowse)
Chromosome: chr11 Position: 15932346 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 71.79% | 28.21% |
| All Indica | 798 | 89.72% | 10.28% |
| All Japonica | 497 | 40.04% | 59.96% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 89.30% | 10.70% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 211 | 89.10% | 10.90% |
| Temperate Japonica | 335 | 23.28% | 76.72% |
| Tropical Japonica | 94 | 77.66% | 22.34% |
| Japonica Intermediate | 68 | 70.59% | 29.41% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1115932346 | C->T | INTERGENIC | None |